Package: EstimateBreed 1.0.0


Willyan Junior Adorian Bandeira
EstimateBreed: Estimation of Environmental Variables and Genetic Parameters
Performs analyzes and estimates of environmental covariates and genetic parameters related to selection strategies and development of superior genotypes. It has two main functionalities, the first being about prediction models of covariates and environmental processes, while the second deals with the estimation of genetic parameters and selection strategies. Designed for researchers and professionals in genetics and environmental sciences, the package combines statistical methods for modeling and data analysis. This includes the plastochron estimate proposed by Porta et al. (2024) <doi:10.1590/1807-1929/agriambi.v28n10e278299>, Stress indices for genotype selection referenced by Ghazvini et al. (2024) <doi:10.1007/s10343-024-00981-1>, the Environmental Stress Index described by Tazzo et al. (2024) <https://revistas.ufg.br/vet/article/view/77035>, industrial quality indices of wheat genotypes (Szareski et al., 2019), <doi:10.4238/gmr18223>, Ear Indexes estimation (Rigotti et al., 2024), <doi:10.13083/reveng.v32i1.17394>, Selection index for protein and grain yield (de Pelegrin et al., 2017), <doi:10.4236/ajps.2017.813224>, Estimation of the ISGR - Genetic Selection Index for Resilience for environmental resilience (Bandeira et al., 2024) <https://www.cropj.com/Carvalho_18_12_2024_825_830.pdf>, estimation of Leaf Area Index (Meira et al., 2015) <https://www.fag.edu.br/upload/revista/cultivando_o_saber/55d1ef202e494.pdf>, Restriction of control variability (Carvalho et al., 2023) <doi:10.4025/actasciagron.v45i1.56156>, Risk of Disease Occurrence in Soybeans described by Engers et al. (2024) <doi:10.1007/s40858-024-00649-1> and estimation of genetic parameters for selection based on balanced experiments (Yadav et al., 2024) <doi:10.1155/2024/9946332>.
Authors:
EstimateBreed_1.0.0.tar.gz
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EstimateBreed.pdf |EstimateBreed.html✨
EstimateBreed/json (API)
NEWS
# Install 'EstimateBreed' in R: |
install.packages('EstimateBreed', repos = c('https://willyanjnr.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/willyanjnr/estimatebreed/issues
- aveia - Dataset: Oat data
- clima - Data: Climate Data Set for Predictions
- coefend - Data: Data: Endogamy Coefficient Data Set
- desvamb - Data: Data set for calculating the environmental deviation
- genot - Data: GxE Interaction
- genot2 - Data Set for obtaining genetic parameters.
- leafarea - Data Set for Leaf Area Index
- lin - Data: Wheat Data Set with Protein and Grain Yield
- maize - Data: Maize Dataset
- pheno - Soybean Plastochron Estimation Data Set
- ptn - Data: Wheat Dataset 1
- ptnrg - Data: Wheat Dataset 2
- termaldata - Data Set with air temperature and incident radiation.
- trigo - Data: Wheat Dataset 3
- vig - Data Set for Seed Vigor Extraction
Last updated 12 days agofrom:44417b7cef. Checks:9 OK. Indexed: yes.
Target | Result | Latest binary |
---|---|---|
Doc / Vignettes | OK | Mar 23 2025 |
R-4.5-win | OK | Mar 23 2025 |
R-4.5-mac | OK | Mar 23 2025 |
R-4.5-linux | OK | Mar 23 2025 |
R-4.4-win | OK | Mar 23 2025 |
R-4.4-mac | OK | Mar 23 2025 |
R-4.4-linux | OK | Mar 23 2025 |
R-4.3-win | OK | Mar 23 2025 |
R-4.3-mac | OK | Mar 23 2025 |
Exports:atsumCOIdefault_segdesv_climdidintgenparhethwindviabis_ptnergis_qindustrialisgritulailinearestoptempplastptermalrend_indrestrriskSGstindtameftdeltatransg
Dependencies:abindaskpassbackportsbase64encbitbit64bootbroomcarcarDataclicliprcolorspacecowplotcpp11crayoncrulcurlDerivdigestdoBydplyrextrafontextrafontdbfansifarverfastmapfontBitstreamVerafontLiberationfontquiverFormulagdtoolsgenericsggplot2ggrepelgluegridExtragtablehmshrbrthemeshtmltoolshttpcodehttrisobandjsonlitelabelinglatticelifecyclelme4lmtestlubridatemagrittrMASSMatrixMatrixModelsmgcvmicrobenchmarkmimeminqaminquemodelrmunsellnasapowernlmenloptrnnetnumDerivopensslpbkrtestpillarpkgconfigprettyunitsprogresspurrrquantregR6rbibutilsRColorBrewerRcppRcppArmadilloRcppEigenRcppProgressRdpackreadrreformulasrlangRttf2pt1scalessommerSparseMstringistringrsurvivalsyssystemfontstibbletidyrtidyselecttimechangetriebeardtzdburltoolsutf8vctrsviridisviridisLitevroomwithrzoo