Package: EstimateBreed
Type: Package
Title: Estimation of Environmental Variables and Genetic Parameters
Version: 1.0.2
Date: 2025-11-02
Authors@R: 
  c(person("Willyan Junior Adorian","Bandeira",
           role = c("aut", "cre"),
           email = "bandeira.wjab@gmail.com",
           comment = c(ORCID = "0000-0002-9430-3664")),
    person("Ivan Ricardo", "Carvalho",
           role = c("aut","ctb"),
           comment = c(ORCID = "0000-0001-7947-4900")),
    person("Murilo Vieira", "Loro",
           role = c("aut","ctb"),
           comment = c(ORCID = "0000-0003-0241-4226")),
    person("Leonardo Cesar", "Pradebon",
           role = c("aut","ctb"),
           comment = c(ORCID = "0000-0001-7827-6312")),
    person("Jose Antonio Gonzalez", "da Silva",
           role = c("aut","ctb"),
           comment = c(ORCID = "0000-0002-9335-2421")))
Maintainer: Willyan Junior Adorian Bandeira <bandeira.wjab@gmail.com>
Description: Performs analyzes and estimates of environmental
        covariates and genetic parameters related to selection
        strategies and development of superior genotypes. It has two
        main functionalities, the first being about prediction models
        of covariates and environmental processes, while the second
        deals with the estimation of genetic parameters and selection
        strategies. Designed for researchers and professionals in
        genetics and environmental sciences, the package combines
        statistical methods for modeling and data analysis. This
        includes the plastochron estimate proposed by Porta et al.
        (2024) <doi:10.1590/1807-1929/agriambi.v28n10e278299>, Stress
        indices for genotype selection referenced by Ghazvini et al.
        (2024) <doi:10.1007/s10343-024-00981-1>, the Environmental
        Stress Index described by Tazzo et al. (2024)
        <https://revistas.ufg.br/vet/article/view/77035>, industrial
        quality indices of wheat genotypes (Szareski et al., 2019),
        <doi:10.4238/gmr18223>, Ear Indexes estimation (Rigotti et al.,
        2024), <doi:10.13083/reveng.v32i1.17394>, Selection index for
        protein and grain yield (de Pelegrin et al., 2017),
        <doi:10.4236/ajps.2017.813224>, Estimation of the ISGR -
        Genetic Selection Index for Resilience for environmental
        resilience (Bandeira et al., 2024)
        <https://www.cropj.com/Carvalho_18_12_2024_825_830.pdf>,
        estimation of Leaf Area Index (Meira et al., 2015)
        <https://www.fag.edu.br/upload/revista/cultivando_o_saber/55d1ef202e494.pdf>,
        Restriction of control variability (Carvalho et al., 2023)
        <doi:10.4025/actasciagron.v45i1.56156>, Risk of Disease
        Occurrence in Soybeans described by Engers et al. (2024)
        <doi:10.1007/s40858-024-00649-1> and estimation of genetic
        parameters for selection based on balanced experiments (Yadav
        et al., 2024) <doi:10.1155/2024/9946332>.
License: GPL (>= 3)
URL: https://github.com/willyanjnr/EstimateBreed
Depends: R (>= 4.1.0)
Imports: dplyr, ggplot2, broom, purrr, ggrepel, grid, httr, jsonlite,
        lubridate, nasapower, tidyr, viridis, cowplot, sommer, lme4,
        minque, utils, car, lmtest
Suggests: knitr, rmarkdown, testthat (>= 3.0.0), roxygen2, DT
VignetteBuilder: knitr
Encoding: UTF-8
LazyData: true
LazyLoad: true
Language: en-US
RoxygenNote: 7.3.2
Config/pak/sysreqs: cmake make libicu-dev libssl-dev libx11-dev
Repository: https://willyanjnr.r-universe.dev
Date/Publication: 2025-11-02 19:41:23 UTC
RemoteUrl: https://github.com/willyanjnr/estimatebreed
RemoteRef: HEAD
RemoteSha: 3ec3f267a3706ab7879fea0a1566d06fd1996fd1
NeedsCompilation: no
Packaged: 2026-09-27 07:36:01 UTC; root
Author: Willyan Junior Adorian Bandeira [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-9430-3664>),
  Ivan Ricardo Carvalho [aut, ctb] (ORCID:
    <https://orcid.org/0000-0001-7947-4900>),
  Murilo Vieira Loro [aut, ctb] (ORCID:
    <https://orcid.org/0000-0003-0241-4226>),
  Leonardo Cesar Pradebon [aut, ctb] (ORCID:
    <https://orcid.org/0000-0001-7827-6312>),
  Jose Antonio Gonzalez da Silva [aut, ctb] (ORCID:
    <https://orcid.org/0000-0002-9335-2421>)